salzman-lab SICILIAN issues

salzman-lab / SICILIAN

GNU General Public License v2.0

19 stars 11 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Enhancement step: updating `light_utils.py` to run with current Pandas & Numpy when there are no junctions

#26 fomightez opened 1 month ago
0
[404] Page not found: https://github.com/salzman-lab/nf-sicilian?tab=readme-ov-file

#25 Whistick opened 2 months ago
1
Enhancement request: cutpointr should be listed under the 'Software requirements' section of README.md

#24 fomightez closed 3 months ago
1
Error processing Gencode GTF

#23 mblanche opened 4 months ago
0
domains file :i could not find domains file

#22 lancy-liang opened 1 year ago
1
create annotator from 10x references genes.gtf.gz

#21 leezx opened 1 year ago
1
EXITING: because of fatal INPUT file error: could not open read file

#20 TinyTasy opened 1 year ago
0
AssertionError: bam_read1.query_name==bam_read2.query_name

#19 zyh4482 closed 1 year ago
1
AssertionError: bam_read1.query_name==bam_read2.query_name

#18 zyh4482 opened 1 year ago
0
The detection of 10X single-cell transcriptome gene fusion

#17 chuiqin opened 1 year ago
1
Missing columns in final output of Smart-seq2 dataset

#16 zyh4482 closed 2 years ago
1
Too many prefixes in input argument "names" for ss2 data

#15 zyh4482 closed 2 years ago
2
Bug: create_annotator.py

#14 zyh4482 closed 2 years ago
5
FASTQ Formats compatible with SICILIAN

#13 malbahrani closed 2 years ago
1
Issues about Download ready-to-use index and annotator files

#12 tjhwangxiong closed 2 years ago
2
Input parameters for SICILIAN

#11 tjhwangxiong closed 2 years ago
1
Index Error when trying to run create_annotator.py

#10 gabee-chan opened 2 years ago
4
dimain file

#9 kayla-xu closed 2 years ago
1
Error submitting job

#8 MEFarhadieh closed 2 years ago
5
A brief test to start up?

#7 ryao-mdanderson closed 10 months ago
2
A TypeError

#6 houruiyan closed 2 years ago
1
Further Documentation of the SICILIAN Output

#5 apdavid closed 2 years ago
1
Create LICENSE

#4 salzmanlab-admin closed 3 years ago
0
Update GLM_script_light.R

#3 mjmccoy opened 3 years ago
0
Update README.md

#2 mjmccoy opened 3 years ago
1
Missing file error

#1 amunzur closed 10 months ago
5