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salzman-lab
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SPLASH
MIT License
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Add a new profile to nextflow.config
#48
juliefrwang
closed
11 months ago
2
Add a new profile in nextflow config
#47
juliefrwang
closed
11 months ago
2
anchor heatmap did not run
#46
chstellar
opened
1 year ago
2
Error on SAMPLESHEET_CHECK
#45
chstellar
closed
1 year ago
2
nextflow required version
#44
JHYSiu
closed
1 year ago
2
Possible error with Levenshtein distance calculation
#43
durrantmm
closed
2 years ago
3
fix bug for non-default element ann
#42
kaitlinchaung
closed
2 years ago
2
fix bug to account for last anchor-target pair
#41
kaitlinchaung
closed
2 years ago
2
Error on GET_ABUNDANT_ANCHORS - exit status (2)
#40
durrantmm
closed
2 years ago
2
Bug fix plotting
#39
eameyer
closed
2 years ago
2
Bug fix plotting
#38
eameyer
closed
2 years ago
2
adding in anchor batching and new stats columns names
#37
kaitlinchaung
closed
2 years ago
2
Dev bowtie2
#36
kaitlinchaung
closed
2 years ago
2
Dev 10 x
#35
kaitlinchaung
closed
2 years ago
2
remove dependency on ann files
#34
kaitlinchaung
closed
2 years ago
2
remove stringstats reference, add conda envs,names
#33
kaitlinchaung
closed
2 years ago
2
remove groovy samplesheets to improve caching
#32
kaitlinchaung
closed
2 years ago
2
refactor
#31
kaitlinchaung
closed
2 years ago
2
see slide
#30
kaitlinchaung
closed
2 years ago
2
add options to run decoy mode
#29
kaitlinchaung
closed
2 years ago
2
annotation of called exons and alternative splicing
#28
kaitlinchaung
closed
2 years ago
2
concat consensus fastas before STAR
#27
kaitlinchaung
closed
2 years ago
2
incorporate new pvalue script
#26
kaitlinchaung
closed
2 years ago
2
fix data flow bugs when providing anchors_file
#25
kaitlinchaung
closed
2 years ago
2
add annotation files and STAR anno
#24
kaitlinchaung
closed
2 years ago
2
Dev v3
#23
kaitlinchaung
closed
2 years ago
2
add postprocessing file
#22
kaitlinchaung
closed
2 years ago
2
dummy change to revert changes
#21
kaitlinchaung
closed
2 years ago
2
Added l1 and l2 norms of S_j vector, added p-value for setting with n…
#20
TavorB
closed
2 years ago
1
P values
#19
TavorB
closed
2 years ago
1
use both distances and add moment cols
#18
kaitlinchaung
closed
2 years ago
2
updates to fast and slow modes
#17
kaitlinchaung
closed
2 years ago
2
add fast/slow score toggle and score_type param
#16
kaitlinchaung
closed
2 years ago
2
incorporate iterative filtering of anchors
#15
kaitlinchaung
closed
2 years ago
2
add jaccard distance and distance_type param
#14
kaitlinchaung
closed
2 years ago
2
Dev unmapped
#13
MariekeVromman
closed
2 years ago
1
merge dev-mu-d
#12
kaitlinchaung
closed
2 years ago
2
modify AnchorTargetsSamples class structure
#11
kaitlinchaung
closed
2 years ago
2
compute norm scores
#10
kaitlinchaung
closed
2 years ago
2
add distance bounding to score computation
#9
kaitlinchaung
closed
2 years ago
2
update parse_anchors string search
#8
kaitlinchaung
closed
2 years ago
2
add re annotation step
#7
kaitlinchaung
closed
2 years ago
2
add fastq trimming step
#6
kaitlinchaung
closed
2 years ago
2
merge dev-phase2-score
#5
kaitlinchaung
closed
2 years ago
1
add conda params and some comments
#4
kaitlinchaung
closed
2 years ago
2
add debugging
#3
kaitlinchaung
closed
2 years ago
3
only compute and log top targets
#2
kaitlinchaung
closed
2 years ago
3
features to add for March 23, 2022
#1
kaitlinchaung
closed
2 years ago
1