Open wook2014 opened 1 year ago
An error occurred when running with spliz nextflow pipeline
ValueError: The truth value of a DataFrame is ambiguous. Use a.empty, a.bool(), a.item(), a.any() or a.all().
It seemed that the problem can be located in file calc_splizvd.py line 387
calc_splizvd.py
df["cov"] = df["gene"].map(grouped.apply(lambda x: x['z_Start'].cov(x['z_End'])))
And it should be like this
df["cov"] = df["gene"].map(grouped.apply(lambda x: x['z_Start'].cov(x['z_End'])).to_dict())
The very same problem also exists as mentioned in https://github.com/juliaolivieri/SpliZ_pipeline/issues/10
Description of the bug
An error occurred when running with spliz nextflow pipeline
It seemed that the problem can be located in file
calc_splizvd.pyline 387And it should be like this
The very same problem also exists as mentioned in https://github.com/juliaolivieri/SpliZ_pipeline/issues/10