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sam-baird / mlst-seeker

Find bacterial genomes on NCBI with a given multi-locus sequence type
MIT License
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Update existing records when PubMLST updates #1

Open sam-baird opened 8 months ago

sam-baird commented 8 months ago

mlst-seeker cache should update existing records when the PubMLST database updates. For records that have all assigned alleles but no ST, re-attempt assigning ST using new ST definitions. For records that have one or more missing allele numbers, pull assembly and run MLST again to attempt assigning ST.

sam-baird commented 7 months ago

Store unassigned allele full gene sequence in place of allele number?

sam-baird commented 7 months ago

Or MD5 hash, the mlst calling program has a mechanism for this