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samWieczorek / old_Prostar

Graphical User Interface for the R-package DAPAR
http://www.bioconductor.org/packages/release/bioc/html/Prostar.html
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[BUG Prostar] Prostar() function not found #6

Closed samWieczorek closed 2 years ago

samWieczorek commented 2 years ago

From Bioconductor issues:

Hi,

I'm not sure if I'm doing something wrong, but can't seem to start the GUI with Prostar (as indicated in the manual). Followed the instruction in Prostar manual (i'm using Rstudio in linux) and looks like I have all dependencies. Bioconductor install seems ok since I've validated my BiocManager and get a "TRUE" output.

Can someone let me know if I'm missing something or could it be an issue with using R 4.1.2?

Thanks

please also include the results of running the following in an R session library(Prostar)

Prostar()

Error in Prostar() : could not find function "Prostar"

sessionInfo( )

R version 4.1.2 (2021-11-01) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 20.04.3 LTS

Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0

locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] Prostar_1.26.1

loaded via a namespace (and not attached): [1] BiocManager_1.30.16 compiler_4.1.2 tools_4.1.2

samWieczorek commented 2 years ago

This little bug has been fixed in the 1.26.3 version.

samWieczorek commented 2 years ago

Version 1.26.3 is available both in Bioconductor and as a standalone app in prostar-proteomics.org