[BUG Prostar] Prostar 1.28 stand-alone install

Hi, I'm trying to install Prostar 1.28 stand-alone : I followed the instructions in the manual but I get this message :

library(Prostar) Prostar() Error in Prostar() : impossible to find the "Prostar" function

When I type > BiocManager::valid(), R tells me that the randomForest 4.7-1 package is too old but when I try to update randomForest with >BiocManager::install("randomForest", update = TRUE, ask = FALSE), it doesn't work : I don't know if that's what's blocking the installation.

Thanks for your help!

sessionInfo() R version 4.2.0 (2022-04-22) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Big Sur 11.2.3

Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale: [1] fr_FR.UTF-8/fr_FR.UTF-8/fr_FR.UTF-8/C/fr_FR.UTF-8/fr_FR.UTF-8

attached base packages: [1] parallel stats4 stats graphics grDevices utils datasets methods base

other attached packages: [1] randomForest_4.7-1 DAPARdata_1.26.0 DAPAR_1.28.0 MSnbase_2.22.0
[5] ProtGenerics_1.28.0 S4Vectors_0.34.0 mzR_2.30.0 Rcpp_1.0.8.3
[9] Biobase_2.56.0 BiocGenerics_0.42.0 Prostar_1.28.0 BiocManager_1.30.18

loaded via a namespace (and not attached): [1] bitops_1.0-7 xts_0.12.1 lubridate_1.8.0 doParallel_1.0.17
[5] RColorBrewer_1.1-3 doRNG_1.8.2 tools_4.2.0 imp4p_1.2
[9] backports_1.4.1 DT_0.23 utf8_1.2.2 R6_2.5.1
[13] affyio_1.66.0 KernSmooth_2.23-20 DBI_1.1.2 colorspace_2.0-3
[17] withr_2.5.0 tidyselect_1.1.2 curl_4.3.2 compiler_4.2.0
[21] preprocessCore_1.58.0 graph_1.74.0 cli_3.3.0 missMDA_1.18
[25] mice_3.14.0 flashClust_1.01-2 caTools_1.18.2 scales_1.2.0
[29] mvtnorm_1.1-3 affy_1.74.0 stringr_1.4.0 digest_0.6.29
[33] pkgconfig_2.0.3 htmltools_0.5.2 highcharter_0.9.4 highr_0.9
[37] FactoMineR_2.4 itertools_0.1-3 fastmap_1.1.0 limma_3.52.1
[41] htmlwidgets_1.5.4 rlang_1.0.2 TTR_0.24.3 quantmod_0.4.20
[45] impute_1.70.0 generics_0.1.2 zoo_1.8-10 jsonlite_1.8.0
[49] mzID_1.34.0 BiocParallel_1.30.2 gtools_3.9.2.1 dplyr_1.0.9
[53] magrittr_2.0.3 rlist_0.4.6.2 leaps_3.1 MALDIquant_1.21
[57] Matrix_1.4-1 munsell_0.5.0 fansi_1.0.3 MsCoreUtils_1.8.0
[61] lifecycle_1.0.1 vsn_3.64.0 scatterplot3d_0.3-41 stringi_1.7.6
[65] yaml_2.3.5 MASS_7.3-57 zlibbioc_1.42.0 gplots_3.1.3
[69] plyr_1.8.7 grid_4.2.0 ggrepel_0.9.1 crayon_1.5.1
[73] lattice_0.20-45 knitr_1.39 pillar_1.7.0 igraph_1.3.1
[77] rngtools_1.5.2 reshape2_1.4.4 codetools_0.2-18 XML_3.99-0.9
[81] glue_1.6.2 evaluate_0.15 Iso_0.0-18.1 pcaMethods_1.88.0
[85] data.table_1.14.2 missForest_1.5 vctrs_0.4.1 foreach_1.5.2
[89] gtable_0.3.0 purrr_0.3.4 tidyr_1.2.0 norm_1.0-10.0
[93] clue_0.3-60 assertthat_0.2.1 ggplot2_3.3.6 xfun_0.31
[97] broom_0.8.0 ncdf4_1.19 truncnorm_1.0-8 tibble_3.1.7
[101] iterators_1.0.14 IRanges_2.30.0 cluster_2.1.3 ellipsis_0.3.2

samWieczorek / old_Prostar

[BUG Prostar] Prostar 1.28 stand-alone install #61