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samdon / pmtk3

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Installation crashes in LogisticLossSimple #9

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. Follow the installation instruction: 
http://code.google.com/p/pmtk3/wiki/installation
2. Macintosh; matlab 7.9.0.529 (R2009b)
3. testPmtk3 crashes.

What is the expected output? What do you see instead?

I expected the demos to run. Instead I get:
??? Undefined function or variable 'p'.

Error in ==> LogisticLossSimple at 16
Xw = X .* repmat(rowvec(weights), 1, p);

Sure enough, LogisticLossSimple refers to an undefined variable 'p'.

What version / revision of the product are you using? On what operating
system?
pmtk3-24October2010.zip
MacOS 10.6.5

Please provide any additional information below.

Here's the command history in matlab:
>> initPmtk3
initializing pmtk3
downloading GGM-GWishart.............done
downloading SPAMS-1.02...............failed
downloading bpca.....................done
downloading dpmixturesTeh07..........done
downloading ekfukf1.2................done
downloading export_fig...............done
downloading exportfig................done
downloading fastICA-2.5..............done
downloading fastfit..................done
downloading gaimc1.0-graphAlgo.......done
downloading glmnet-matlab............done
downloading gpml-matlab..............done
downloading graphViz4Matlab..........done
downloading l1ls.....................done
downloading lars.....................done
downloading libdai-0.2.6.............done
downloading liblinear-1.51...........done
downloading libsvm-mat-2.9.1.........done
downloading lightspeed2.3............done
downloading markSchmidt-21june2010...done
downloading matbugs..................done
downloading matlabRlink..............done
downloading mcmcdiag.................failed
downloading mplp-1.0.................done
downloading netlab3.3................done
downloading onlineEM.................done
downloading randraw..................done
downloading sparseBayes2.0...........done
downloading svmLightWindows..........done
downloading vblinlogreg..............done
welcome to pmtk3
>> testPmtk3
Checking for matlabTools.........PASSED
Checking initialization..........PASSED
Checking pmtkSupport packages....PASSED
Checking pmtkData................downloading  
http://pmtkdata.googlecode.com/svn/trunk/crabs/crabs.zip to 
/Users/don/Documents/MATLAB/MurphySimulator/pmtk3/data/crabs.zip
unzipped and loaded crabs.mat
PASSED
Checking for graphviz............Please install or upgrade graphViz
Please install or upgrade graphViz
Please install or upgrade graphViz
Please install or upgrade graphViz
Please install or upgrade graphViz
FAILED
Testing selected code............

nll =
    6.9315
??? Undefined function or variable 'p'.

Error in ==> LogisticLossSimple at 16
Xw = X .* repmat(rowvec(weights), 1, p);

Error in ==> logregFit>@(w)LogisticLossSimple(w,X,y,weights) at 101
    loss = @(w) LogisticLossSimple(w, X, y, weights);

Error in ==> penalizedL2 at 13
    [nll,g] = gradFunc(w,varargin{:});

Error in ==> logregFit>@(w)penalizedL2(w,loss,lambdaVec(:)) at 133
    penloss = @(w)penalizedL2(w, loss, lambdaVec(:));

Error in ==> minFunc at 303
    [f,g] = funObj(x,varargin{:});

Error in ==> logregFit at 135
    [w, opt.finalObj, opt.exitflag, opt.output] = ...

Error in ==> logregL2FitTest at 19
model1 = logregFit(X, y01, 'lambda', lambda, 'preproc', pp, 'fitOptions', opts);

Error in ==> testPmtk3 at 66
logregL2FitTest;

Original issue reported on code.google.com by mathis...@gmail.com on 23 Nov 2010 at 7:44

GoogleCodeExporter commented 9 years ago 
The November 23, 2010 Release fixed this problem.
Thanks!

Original comment by mathis...@gmail.com on 24 Nov 2010 at 2:05

GoogleCodeExporter commented 9 years ago 
Moved to GitHub: https://github.com/probml/pmtk3/issues/9

Original comment by irosen on 4 Jan 2014 at 2:24