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samschaf / team_Methylhomies

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R Code for Data Retrieval #2

Open rg7486 opened 7 years ago

rg7486 commented 7 years ago

source("http://www.bioconductor.org/biocLite.R") biocLite("GEOquery") library(GEOquery) filePaths = getGEOSuppFiles("GSE59685") filePaths

suminwei2772 commented 7 years ago

To read in the beta_value.csv file: GSE59685_betas <- read.csv("~/path/to/file/GSE59685/GSE59685_betas.csv.gz", comment.char="#", stringsAsFactors=FALSE)