Open Sandy4321 opened 6 months ago
For the "working" directory. I manually create that directory structure and copy the files from the Synthea zip.
As you mentioned to me, the zip you get from the link today is not the one I got several weeks ago. The fun of using "latest". This link should take you to the one I download, but the code should work on any set of one patient and the hospitalxxx + practicxxx files.
Link to older zip: https://github.com/synthetichealth/synthea-sample-data/blob/167e701ac736cc2d79df1d5570bbafbfc4ab30b4/downloads/latest/synthea_sample_data_fhir_latest.zip
Correction, it was even a slightly older version: https://github.com/synthetichealth/synthea-sample-data/blob/1fe1beaa80a8fbe7b64c0c135bcbb8b1346ef38a/downloads/latest/synthea_sample_data_fhir_latest.zip
may you clarify from where to get this data working bundles .json as written in code synthea_bundles = glob.glob("./working/bundles/*.json") https://github.com/samschifman/RAG_on_FHIR/blob/main/RAG_on_FHIR_with_KG/FHIR_GRAPHS.ipynb