Closed jkotl0327 closed 4 years ago
You have to copy the bcftools binary inside a directory in your binary path or, alternatively, invoke the command as ./bcftoools
rather than as bcftools
while making sure it is located in the same directory where you are running the shell command
Also note that the command export BCFTOOLS_PLUGINS
must have the proper directory set. You can't just blindly copy and paste it, unless the path /path/to/bcftools/plugins
exists.
Hello, I downloaded your source code (in mac terminal, bash shell) using the simple copy-paste command you offered. I then pointed the environment label to the proper location by copying and pasting the command on your website. Then I entered your command to convert my 23andme file into VCF format: 'bcftools convert --tsv2vcf input.tab.gz -f ref.fa -s Jeremy -Ob -o JeremyDNA.bcf' At this point I got: 'bcftools: command not found' What should I do? I have attached 3 screenshots of everything I did below. Thank you.