feature request: basic association analysis

samtools / bcftools

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feature request: basic association analysis #182

Open dwaggott opened 9 years ago

dwaggott commented 9 years ago

Given a binary trait run a chisq/fisher against (a) the genotypes or (b) the missing.

I use this as a qc step to help get rid of extreme artefacts before association testing at the gene level.

jmarshall commented 8 years ago

(Related to #109)