Closed tanger-code closed 10 months ago
Hi. If I put two adjacent small variants together, will it be represented separately when it's normalized? For example, if I have 2 SNPs:
chrom pos ref alt chr1 100 A G chr1 102 C T
And I represent them jointly like this:
chrom pos ref alt chr1 100 ANC GNT
When I use bcftools norm command, will it be divided into two variants?
bcftools norm
If and only if you run with the -a, --atomize option, then yes :)
-a, --atomize
Hi. If I put two adjacent small variants together, will it be represented separately when it's normalized? For example, if I have 2 SNPs:
And I represent them jointly like this:
When I use
bcftools norm
command, will it be divided into two variants?