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Hello,
When merging VCFs, I would like to not allow multiallelic records and only merge by ID, does combining multiple --merge options works ?
bcftools merge -m none -m id -i VCTYPE:join -O v -o out.vcf in1.vcf in2.vcf in3.vcf ?
My main issue is that I was using -m none, and sometimes identical records with different IDs were merged, the different IDs being concatenated and separated by a semi-column.
Hello, When merging VCFs, I would like to not allow multiallelic records and only merge by ID, does combining multiple --merge options works ?
bcftools merge -m none -m id -i VCTYPE:join -O v -o out.vcf in1.vcf in2.vcf in3.vcf ?
My main issue is that I was using -m none, and sometimes identical records with different IDs were merged, the different IDs being concatenated and separated by a semi-column.
Thanks a lot for your feedback ! Yvan