This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Alas, no. The normalization does not take into account modifications introduced by upstream variants. Although this seems desirable at first glance, it becomes less clear when one considers variants in trans.
Hi. I am using
bcftools norm
command to norm my VCF, but something error happen.If the vcf file contains the two variants bellow:![image](https://github.com/samtools/bcftools/assets/74750242/bd77658c-5997-4ab6-ad61-99110da4eb3f)
Then I use bcftools norm to norm them, and get the following results:![image](https://github.com/samtools/bcftools/assets/74750242/09e64a11-71e2-4056-a0a8-5c12fc8f8627)
But in fact the![image](https://github.com/samtools/bcftools/assets/74750242/635eecfb-50fd-4df1-9219-5fed4471dba0)
del variant
can keep moving to the left, like this:Are there some ways to do this?