Feature request: --new-gt c:0/X

samtools / bcftools

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Feature request: --new-gt c:0/X #2065

Closed pd3 closed 9 months ago

pd3 commented 9 months ago

+setGT does not allow the use of X in custom genotypes, eg --new-gt c:'0/M' is acceptable, but c:'0/X' causes the following error:

Could not parse the genotype: c:0/X

Could this capability be added?

Originally posted by @JosephLalli in https://github.com/samtools/bcftools/issues/1800#issuecomment-1871698131