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samtools / bcftools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
http://samtools.github.io/bcftools/
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bedtools multicov is returing Could not find/load indexes #2116

Closed NiharikaCUSB closed 6 months ago

NiharikaCUSB commented 7 months ago

bedtools multicov is returing Could not find/load indexes. However index files are generated for input bams using samtools index -b -@100 input.bam

pd3 commented 6 months ago

This looks like an issue for a different program, not bcftools ;)