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samtools / bcftools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
http://samtools.github.io/bcftools/
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Genotype Probability (GP) option for the dosage plugin #2166

Closed PaulTimmers closed 2 months ago

PaulTimmers commented 2 months ago

The dosage plugin is useful for quickly converting VCF genotypes into dosages; however, to date there was no option to convert genotype probabilities into dosages. This pull request contains the addition of a single option (GP) to the dosage plugin:

bcftools +dosage input.vcf -- -t GP

pd3 commented 2 months ago

This was closed without explanation. I am assuming that's because the +tag2tag plugin was discovered which has this functionality.