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For the bcftools concat function, could we add some retry mechanisms when directly accessing s3 files? I am using bcftools concat to directly concatenate a large number of vcf files. Due to the huge volume, if there are network fluctuations during the concatenation process, the connection is prone to aborting halfway, resulting in a "software caused connection abort" error. This makes it difficult to successfully complete the concatenation. Would it be possible to add some retry mechanisms, such as retrying three times, which could significantly improve this situation of concatenation failures?
Currently, I am unable to reproduce this issue, presumably because the network fluctuations have subsided. Unfortunately, I didn't save the log. I recall that before the "software caused connection abort" error, there was an "[E::hts_hopen]" error
For the bcftools concat function, could we add some retry mechanisms when directly accessing s3 files? I am using bcftools concat to directly concatenate a large number of vcf files. Due to the huge volume, if there are network fluctuations during the concatenation process, the connection is prone to aborting halfway, resulting in a "software caused connection abort" error. This makes it difficult to successfully complete the concatenation. Would it be possible to add some retry mechanisms, such as retrying three times, which could significantly improve this situation of concatenation failures?
Currently, I am unable to reproduce this issue, presumably because the network fluctuations have subsided. Unfortunately, I didn't save the log. I recall that before the "software caused connection abort" error, there was an "[E::hts_hopen]" error