undefined reference to `bcf_hdr_format' when running make

[jjfarrell]

When running make on the cloned develop branch of bcftools, the following error occurs:

gcc -rdynamic -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o vcfnorm.o vcfgtcheck.o vcfview.o vcfannotate.o vcfroh.o vcfconcat.o vcfcall.o mcall.o vcmp.o gvcf.o reheader.o convert.o vcfconvert.o tsv2vcf.o vcfcnv.o HMM.o vcfplugin.o consensus.o ploidy.o bin.o hclust.o version.o regidx.o smpl_ilist.o mpileup.o bam2bcf.o bam2bcf_indel.o bam_sample.o ccall.o em.o prob1.o kmin.o ../htslib/libhts.a -lpthread -lz -lm -ldl reheader.o: In function reheader_bcf': /restricted/projectnb/genpro/github/bcftools/reheader.c:374: undefined reference tobcf_hdr_format' collect2: ld returned 1 exit status make: *\ [bcftools] Error 1

[jjfarrell]

The develop branch of htslib.git is needed to avoid that error.

git clone --branch=develop git://github.com/samtools/htslib.git git clone --branch=develop git://github.com/samtools/bcftools.git git clone --branch=develop git://github.com/samtools/samtools.git cd bcftools; make cd ../samtools; make

[pd3]

I believe this is resolved, closing now.