samtools / hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats
http://samtools.github.io/hts-specs/
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Different VCF conventions #554

Open illusional opened 3 years ago

illusional commented 3 years ago

Is there a document or good summary of the different types / conventions for VCF? For example, VCF, sites-only VCF, gVCF, pVCF, spVCF. EG:

I'm interested to know if there are more, (if there's a good "bible" for this,) and what interesting conventions there are for each.

Thanks in advance!

tcezard commented 3 years ago

There isn't such a document at least not on this site. But that might be a good thing to add to the wiki alongside the glossary.