samtools / hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats
http://samtools.github.io/hts-specs/
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test/sam: Duplicate aux field tags #742

Closed zaeleus closed 7 months ago

zaeleus commented 1 year ago

In test/sam/passed/aux.pass-tag.sam, record tag3 has duplicate Z9 and z9 field tags.

tag3    4   *   0   0   *   *   0   0   CAT QQQ Z9:Z:Z9 z9:Z:z9 Z9:Z:Z9 z9:Z:z9

As per § 1.5 "The alignment section: optional fields" (2023-05-24):

Within each alignment line, no TAG may appear more than once...