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samtools / hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats
http://samtools.github.io/hts-specs/
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test/vcf: Duplicate contig header record ID #744

Closed zaeleus closed 2 months ago

zaeleus commented 8 months ago

In test/vcf/4.3/passed/passed_meta_contig.vcf, there are two contig header records with the same ID.

##contig=<ID=1>
##contig=<ID=1,length=123456>

As per § 1.4 "Meta-information lines" (2022-11-27):

All structured lines require an ID which must be unique within their type...