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samtools / hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats
http://samtools.github.io/hts-specs/
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Local Alleles (PR #434) applied to VCFv4.4 #745

Closed jmarshall closed 9 months ago

jmarshall commented 10 months ago

This draft PR applies #434's Local Allele changes to the VCFv4.4 document on top of current master. It is not intended to split the conversation from the existing PR, but to provide a preview PDF and demonstration of how this applies to current v4.4.

If the PR author and VCF maintainers agree, and wish to apply the local alleles additions to v4.4 instead of v4.3 (or perhaps to both), then we can force push #434's branch to this commit, close this PR, and continue the conversation on the original PR.

github-actions[bot] commented 10 months ago

Changed PDFs as of 4e4bae4cc7a2889b079688170c777b1ff5401e39: VCFv4.4 (diff).

jmarshall commented 10 months ago

Incidentally, diff PDF previews include all pages rather than only the changed pages due to a ghostscript bug that was fixed two months ago but has not yet appeared in a release. So that's fun…

jmarshall commented 10 months ago

@d-cameron: Please comment (or just do it!) on whether you wish to convert PR #434 to apply to the VCFv4.4 document by force-pushing this PR's HEAD to Yossi's PR's branch.

jmarshall commented 9 months ago

PR #434 now contains this update.