samtools htsjdk-next-beta issues

samtools / htsjdk-next-beta

Staging ground for the development of the next major version of HTSJDK

BSD 3-Clause "New" or "Revised" License

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issues

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Draft reader/codec factory draft - WIP.

#51 cmnbroad opened 5 years ago
0
Draft reader/codec factory draft - WIP.

#50 cmnbroad closed 5 years ago
1
Fix stream test.

#49 cmnbroad opened 5 years ago
0
remove Jay Carey and add Chris Norman as new maintainer

#48 lbergelson closed 5 years ago
3
Remove the Windows stdin/stdout tests

#47 cmnbroad opened 5 years ago
0
Converted to using scalatest.

#46 tfenne opened 5 years ago
0
Proposal implementation of IOResource

#45 magicDGS opened 5 years ago
1
Dgs add code of conduct

#44 tfenne closed 5 years ago
0
Figure out why pull approve isn't working and reinstall it

#43 lbergelson opened 5 years ago
1
Add docs project for technical documentation

#42 magicDGS opened 5 years ago
1
Change README to AsciiDoc

#41 magicDGS closed 5 years ago
3
Update .gitignore for Eclipse

#40 magicDGS closed 5 years ago
0
Add .gitattributes to establish line ending policy.

#39 cmnbroad opened 5 years ago
0
Attempt at .gitattributes to establish line ending policy.

#38 cmnbroad closed 5 years ago
0
Evaluate Cirrus-CI for continuous integration

#37 magicDGS opened 5 years ago
2
Define how we want to partition HtsjdkException classes

#36 cmnbroad opened 5 years ago
0
Resolve how to handle issues with supporting Windows

#35 cmnbroad opened 5 years ago
2
URI and Path specifier classes for input/output resources.

#34 cmnbroad closed 5 years ago
8
Add annotations for API visibility/stability

#33 magicDGS opened 5 years ago
0
Create ReaderFactory interface

#32 magicDGS opened 5 years ago
0
Allow for signed URI support in design of new interfaces

#31 magicDGS opened 5 years ago
0
Design codec interface

#30 magicDGS opened 5 years ago
0
Create Reader interface

#29 magicDGS opened 5 years ago
0
trying to figure out the pull approve yml syntax error

#28 lbergelson closed 6 years ago
1
Add pull approve configuration

#27 magicDGS closed 6 years ago
3
Add utilities for common args validation

#26 magicDGS closed 6 years ago
3
Add HtsjdkException

#25 magicDGS closed 6 years ago
4
Add badges to README and AppVeyor configuration

#24 magicDGS closed 5 years ago
4
Decide how to package/organize test-helper sources

#23 magicDGS opened 6 years ago
0
Set guidelines for writing code and documentation (javadoc)

#22 magicDGS opened 6 years ago
0
Adding stub files that I missed in my previous commit

#21 lbergelson closed 6 years ago
1
Set up automatic versioning

#20 lbergelson opened 6 years ago
2
Decide on where and how to store test data

#19 lbergelson opened 6 years ago
2
Decide which versions of java to target

#18 lbergelson opened 6 years ago
9
Decide how to separate modules

#17 magicDGS opened 6 years ago
4
Handle compression with Apache commons-compress

#16 magicDGS opened 6 years ago
0
Use SLF4J logging system for the library

#15 magicDGS opened 6 years ago
4
adding a gradle build system

#14 lbergelson closed 6 years ago
7
Add Mill build system and HtsjdkException

#13 magicDGS closed 6 years ago
1
Cigar interface

#12 magicDGS opened 6 years ago
4
Use Java annotations for API-related documentation

#11 magicDGS opened 6 years ago
1
Decide if we will ever return null from a function.

#10 lbergelson opened 6 years ago
5
add maintainers.md

#9 lbergelson closed 6 years ago
3
Setup sane labels for issue tracking (better backlog)

#8 magicDGS closed 6 years ago
12
Add MAINTAINERS file (or CODEOWNERS)

#7 magicDGS closed 6 years ago
1
Sketch Locatable interface

#6 magicDGS opened 6 years ago
2
Sketch of basic input io interface.

#5 tfenne opened 6 years ago
1
Create CODE_OF_CONDUCT.md

#4 magicDGS closed 5 years ago
3
Administrative things

#3 lbergelson opened 6 years ago
1
Adding LICENSE and AUTHORS file.

#2 lbergelson closed 6 years ago
1