samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.
http://samtools.github.io/htsjdk/
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- Make Unique intervals keep both interval names even when intervals … #1265

Closed yfarjoun closed 5 years ago

yfarjoun commented 5 years ago

…are the same (assuming names are different)

Description

Please explain the changes you made here. Explain the motivation for making this change. What existing problem does the pull request solve?

Checklist

codecov-io commented 5 years ago

Codecov Report

Merging #1265 into master will increase coverage by 0.004%. The diff coverage is 100%.

@@               Coverage Diff               @@
##              master     #1265       +/-   ##
===============================================
+ Coverage     69.353%   69.357%   +0.004%     
- Complexity      8301      8302        +1     
===============================================
  Files            555       555               
  Lines          33116     33117        +1     
  Branches        5572      5572               
===============================================
+ Hits           22967     22969        +2     
+ Misses          7890      7886        -4     
- Partials        2259      2262        +3
Impacted Files Coverage Δ Complexity Δ
...c/main/java/htsjdk/samtools/util/IntervalList.java 68.437% <100%> (+0.981%) 71 <5> (ø) :arrow_down:
...samtools/util/AsyncBlockCompressedInputStream.java 72% <0%> (-4%) 12% <0%> (-1%)
src/main/java/htsjdk/samtools/util/Interval.java 61.818% <0%> (ø) 25% <0%> (+1%) :arrow_up:
...va/htsjdk/samtools/sra/SRAIndexedSequenceFile.java 64.865% <0%> (+2.703%) 7% <0%> (+1%) :arrow_up: