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samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.
http://samtools.github.io/htsjdk/
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Remove redundant and unused BAM_FLAGS from CRAM code. #1292

Closed cmnbroad closed 5 years ago

cmnbroad commented 5 years ago

Minor cleanup/removal of unused of code I noticed during a code review.

codecov-io commented 5 years ago

Codecov Report

Merging #1292 into master will increase coverage by 0.01%. The diff coverage is n/a.

@@              Coverage Diff               @@
##              master     #1292      +/-   ##
==============================================
+ Coverage     67.495%   67.505%   +0.01%     
  Complexity      8150      8150              
==============================================
  Files            558       558              
  Lines          33364     33359       -5     
  Branches        5608      5606       -2     
==============================================
  Hits           22519     22519              
+ Misses          8657      8652       -5     
  Partials        2188      2188
Impacted Files Coverage Δ Complexity Δ
...samtools/cram/structure/CramCompressionRecord.java 82.609% <ø> (+3.442%) 88 <0> (ø) :arrow_down: