samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.
http://samtools.github.io/htsjdk/
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Deprecate TestUtil.deleteRecursively #1315

Closed lbergelson closed 5 years ago

lbergelson commented 5 years ago

Checklist

codecov-io commented 5 years ago

Codecov Report

Merging #1315 into master will increase coverage by 0.028%. The diff coverage is 40%.

@@               Coverage Diff               @@
##              master     #1315       +/-   ##
===============================================
+ Coverage     67.596%   67.624%   +0.029%     
- Complexity      8226      8232        +6     
===============================================
  Files            562       562               
  Lines          33579     33624       +45     
  Branches        5618      5645       +27     
===============================================
+ Hits           22698     22738       +40     
- Misses          8703      8712        +9     
+ Partials        2178      2174        -4
Impacted Files Coverage Δ Complexity Δ
src/main/java/htsjdk/samtools/util/TestUtil.java 50% <0%> (ø) 2 <0> (ø) :arrow_down:
src/main/java/htsjdk/samtools/util/IOUtil.java 58.111% <50%> (-0.181%) 118 <0> (ø)
...c/main/java/htsjdk/samtools/util/SnappyLoader.java 78.571% <0%> (-2.198%) 9% <0%> (ø)
src/main/java/htsjdk/samtools/SamReader.java 81.818% <0%> (-0.94%) 0% <0%> (ø)
src/main/java/htsjdk/samtools/util/GZIIndex.java 61.538% <0%> (-0.531%) 22% <0%> (ø)
src/main/java/htsjdk/samtools/util/CigarUtil.java 30.303% <0%> (-0.466%) 14% <0%> (ø)
...java/htsjdk/samtools/cram/ref/ReferenceSource.java 46.364% <0%> (-0.425%) 19% <0%> (ø)
...htsjdk/tribble/readers/LongLineBufferedReader.java 29.944% <0%> (-0.342%) 15% <0%> (ø)
src/main/java/htsjdk/samtools/BamFileIoUtils.java 2.439% <0%> (-0.03%) 3% <0%> (ø)
...ain/java/htsjdk/samtools/SAMFileWriterFactory.java 67.296% <0%> (-0.012%) 50% <0%> (ø)
... and 18 more