samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

http://samtools.github.io/htsjdk/

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Adding back a removed method #1321

Closed lbergelson closed 5 years ago

lbergelson commented 5 years ago

Adding back an accidentally removed an overload of IntervalList.getUniqueIntervals().
This fixes a compatibility problem revealed in the pre-release checks.

Checklist

[ ] Code compiles correctly
[ ] New tests covering changes and new functionality
[ ] All tests passing
[ ] Extended the README / documentation, if necessary
[ ] Is not backward compatible (breaks binary or source compatibility)

lbergelson commented 5 years ago

@yfarjoun I missed this in review. Compatibility checker caught it...

codecov-io commented 5 years ago

Codecov Report

Merging #1321 into master will increase coverage by 0.007%. The diff coverage is 0%.

@@               Coverage Diff               @@
##              master     #1321       +/-   ##
===============================================
+ Coverage     67.626%   67.633%   +0.007%     
- Complexity      8229      8230        +1     
===============================================
  Files            562       562               
  Lines          33617     33618        +1     
  Branches        5642      5642               
===============================================
+ Hits           22734     22737        +3     
+ Misses          8708      8707        -1     
+ Partials        2175      2174        -1

Impacted Files	Coverage Δ	Complexity Δ
...c/main/java/htsjdk/samtools/util/IntervalList.java	`74.51% <0%> (-0.244%)`	`75 <0> (ø)`
...samtools/util/AsyncBlockCompressedInputStream.java	`76% <0%> (+4%)`	`13% <0%> (+1%)`	:arrow_up:

codecov-io commented 5 years ago

Codecov Report

Merging #1321 into master will increase coverage by 0.007%. The diff coverage is 0%.

@@               Coverage Diff               @@
##              master     #1321       +/-   ##
===============================================
+ Coverage     67.626%   67.633%   +0.007%     
- Complexity      8229      8230        +1     
===============================================
  Files            562       562               
  Lines          33617     33618        +1     
  Branches        5642      5642               
===============================================
+ Hits           22734     22737        +3     
+ Misses          8708      8707        -1     
+ Partials        2175      2174        -1

Impacted Files	Coverage Δ	Complexity Δ
...c/main/java/htsjdk/samtools/util/IntervalList.java	`74.51% <0%> (-0.244%)`	`75 <0> (ø)`
...samtools/util/AsyncBlockCompressedInputStream.java	`76% <0%> (+4%)`	`13% <0%> (+1%)`	:arrow_up: