samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.
http://samtools.github.io/htsjdk/
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Handle PEDIGREE header lines differently for vcf4.2 vs vcf4.3. #1401

Closed cmnbroad closed 5 years ago

cmnbroad commented 5 years ago

Fix https://github.com/samtools/htsjdk/issues/1400.

codecov-io commented 5 years ago

Codecov Report

Merging #1401 into master will decrease coverage by 0.009%. The diff coverage is 100%.

@@               Coverage Diff               @@
##              master     #1401       +/-   ##
===============================================
- Coverage     68.049%   68.041%   -0.009%     
  Complexity      8372      8372               
===============================================
  Files            573       573               
  Lines          33893     33893               
  Branches        5663      5663               
===============================================
- Hits           23064     23061        -3     
- Misses          8641      8643        +2     
- Partials        2188      2189        +1
Impacted Files Coverage Δ Complexity Δ
...main/java/htsjdk/variant/vcf/AbstractVCFCodec.java 76.218% <100%> (ø) 101 <0> (+1) :arrow_up:
...samtools/util/AsyncBlockCompressedInputStream.java 72% <0%> (-4%) 12% <0%> (-1%)
lbergelson commented 5 years ago

Fixes #1400