Closed yfarjoun closed 4 years ago
Merging #1427 into master will increase coverage by
0.086%
. The diff coverage is85.714%
.
@@ Coverage Diff @@
## master #1427 +/- ##
===============================================
+ Coverage 68.118% 68.204% +0.086%
- Complexity 8381 8591 +210
===============================================
Files 573 573
Lines 33988 34407 +419
Branches 5669 5753 +84
===============================================
+ Hits 23152 23467 +315
- Misses 8646 8734 +88
- Partials 2190 2206 +16
Impacted Files | Coverage Δ | Complexity Δ | |
---|---|---|---|
.../main/java/htsjdk/samtools/SAMReadGroupRecord.java | 93.333% <85.714%> (-0.952%) |
48 <0> (ø) |
|
src/main/java/htsjdk/samtools/util/CodeUtil.java | 70% <0%> (-1.429%) |
6% <0%> (+2%) |
|
src/main/java/htsjdk/variant/vcf/VCFHeader.java | 88.889% <0%> (-1.227%) |
113% <0%> (+37%) |
|
src/main/java/htsjdk/tribble/util/FTPHelper.java | 0% <0%> (ø) |
0% <0%> (ø) |
:arrow_down: |
...main/java/htsjdk/tribble/util/RemoteURLHelper.java | 46.667% <0%> (+0.513%) |
4% <0%> (+1%) |
:arrow_up: |
...n/java/htsjdk/variant/vcf/VCFContigHeaderLine.java | 82.609% <0%> (+2.053%) |
16% <0%> (+5%) |
:arrow_up: |
...rc/main/java/htsjdk/tribble/util/ParsingUtils.java | 77.734% <0%> (+2.871%) |
88% <0%> (+44%) |
:arrow_up: |
src/main/java/htsjdk/samtools/util/IOUtil.java | 61.862% <0%> (+3.448%) |
238% <0%> (+118%) |
:arrow_up: |
...samtools/util/AsyncBlockCompressedInputStream.java | 76% <0%> (+4%) |
13% <0%> (+1%) |
:arrow_up: |
src/main/java/htsjdk/tribble/util/HTTPHelper.java | 55% <0%> (+7.083%) |
5% <0%> (+1%) |
:arrow_up: |
... and 1 more |
not sure why...afterall, we have things that are not in the spec (like sortorder=duplicate)
Adding legal values for the PL tag of the @rg SAM header line (BGI and OTHER)