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samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.
http://samtools.github.io/htsjdk/
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Updating versions of commons-compress and xz library #1436

Closed lbergelson closed 4 years ago

lbergelson commented 4 years ago 
Updating versions of commons-compress and xz library

* update commons-compress 1.4.1 -> 1.19
* update xz 1.5 -> 1.8
codecov-io commented 4 years ago

Codecov Report

Merging #1436 into master will increase coverage by 0.041%. The diff coverage is n/a.

@@              Coverage Diff               @@
##              master    #1436       +/-   ##
==============================================
+ Coverage     68.349%   68.39%   +0.041%     
- Complexity      8492     8499        +7     
==============================================
  Files            583      583               
  Lines          34410    34410               
  Branches        5729     5729               
==============================================
+ Hits           23519    23533       +14     
+ Misses          8669     8660        -9     
+ Partials        2222     2217        -5
Impacted Files Coverage Δ Complexity Δ
...amtools/seekablestream/SeekableBufferedStream.java 92.727% <0%> (+3.636%) 17% <0%> (+1%) :arrow_up:
...samtools/util/AsyncBlockCompressedInputStream.java 76% <0%> (+4%) 13% <0%> (+1%) :arrow_up:
...htsjdk/samtools/seekablestream/SeekableStream.java 75% <0%> (+6.25%) 10% <0%> (+1%) :arrow_up:
...dk/samtools/seekablestream/SeekableHTTPStream.java 66.176% <0%> (+7.353%) 17% <0%> (+3%) :arrow_up:
...htsjdk/samtools/util/nio/DeleteOnExitPathHook.java 90.476% <0%> (+9.524%) 4% <0%> (+1%) :arrow_up: