This PR allows a, '.interval_list' to be gzipped. It's now identified by SAMSequenceDictionaryExtractor.
I also added the new extension in public boolean canDecode(final String s) . I don't know tribble enough: is it enough to be identified by gatk/picard ?
Things to think about before submitting:
[x] Make sure your changes compile and new tests pass locally.
[x] Add new tests or update existing ones:
A bug fix should include a test that previously would have failed and passes now.
New features should come with new tests that exercise and validate the new functionality.
[ ] Extended the README / documentation, if necessary
[x] Check your code style.
[x] Write a clear commit title and message
The commit message should describe what changed and is targeted at htsjdk developers
Breaking changes should be mentioned in the commit message.
Description
This PR allows a, '.interval_list' to be gzipped. It's now identified by SAMSequenceDictionaryExtractor.
I also added the new extension in
public boolean canDecode(final String s). I don't know tribble enough: is it enough to be identified by gatk/picard ?Things to think about before submitting: