samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.
http://samtools.github.io/htsjdk/
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Rename HtsjdkPath to HtsPath. #1504

Closed cmnbroad closed 4 years ago

cmnbroad commented 4 years ago

Less busy.

codecov-commenter commented 4 years ago

Codecov Report

Merging #1504 into master will decrease coverage by 0.048%. The diff coverage is 33.333%.

@@               Coverage Diff               @@
##              master     #1504       +/-   ##
===============================================
- Coverage     69.345%   69.297%   -0.048%     
+ Complexity      8893      8891        -2     
===============================================
  Files            601       601               
  Lines          35436     35338       -98     
  Branches        5900      5863       -37     
===============================================
- Hits           24573     24488       -85     
+ Misses          8534      8513       -21     
- Partials        2329      2337        +8     
Impacted Files Coverage Δ Complexity Δ
...rc/main/java/htsjdk/samtools/SamInputResource.java 65.432% <ø> (ø) 20.000 <0.000> (ø)
src/main/java/htsjdk/io/HtsPath.java 51.316% <33.333%> (ø) 15.000 <2.000> (?)
...sjdk/samtools/util/htsget/HtsgetErrorResponse.java 73.333% <0.000%> (-6.667%) 4.000% <0.000%> (ø%)
...tools/cram/encoding/core/GammaIntegerEncoding.java 86.667% <0.000%> (-6.667%) 5.000% <0.000%> (ø%)
.../samtools/cram/compression/ExternalCompressor.java 69.565% <0.000%> (-4.509%) 13.000% <0.000%> (ø%)
...mtools/cram/encoding/core/BetaIntegerEncoding.java 91.304% <0.000%> (-4.348%) 7.000% <0.000%> (ø%)
...am/encoding/core/CanonicalHuffmanByteEncoding.java 52.941% <0.000%> (-2.941%) 6.000% <0.000%> (ø%)
...ing/core/huffmanUtils/HuffmanParamsCalculator.java 80.000% <0.000%> (-1.818%) 5.000% <0.000%> (ø%)
...va/htsjdk/samtools/util/htsget/HtsgetResponse.java 89.394% <0.000%> (-1.783%) 8.000% <0.000%> (ø%)
...dk/samtools/util/SAMRecordPrefetchingIterator.java 74.667% <0.000%> (-1.333%) 13.000% <0.000%> (-1.000%)
... and 37 more