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samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.
http://samtools.github.io/htsjdk/
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Move annotation classes into an annotation package. #1558

Closed cmnbroad closed 3 years ago

cmnbroad commented 3 years ago

Move the API annotations into a separate package.

codecov-commenter commented 3 years ago

Codecov Report

Merging #1558 (b533af6) into master (7ac95d5) will decrease coverage by 0.054%. The diff coverage is n/a.

@@               Coverage Diff               @@
##              master     #1558       +/-   ##
===============================================
- Coverage     69.809%   69.755%   -0.054%     
+ Complexity      9626      9625        -1     
===============================================
  Files            702       702               
  Lines          37607     37500      -107     
  Branches        6107      6069       -38     
===============================================
- Hits           26253     26158       -95     
+ Misses          8904      8884       -20     
- Partials        2450      2458        +8
Impacted Files Coverage Δ
...jdk/beta/codecs/hapref/fasta/FASTADecoderV1_0.java 77.500% <ø> (ø)
...java/htsjdk/beta/codecs/reads/ReadsCodecUtils.java 64.706% <ø> (ø)
...in/java/htsjdk/beta/codecs/reads/bam/BAMCodec.java 100.000% <ø> (ø)
.../java/htsjdk/beta/codecs/reads/bam/BAMDecoder.java 90.909% <ø> (ø)
.../java/htsjdk/beta/codecs/reads/cram/CRAMCodec.java 66.667% <ø> (ø)
...ava/htsjdk/beta/codecs/reads/cram/CRAMDecoder.java 73.404% <ø> (+0.773%) :arrow_up:
...ava/htsjdk/beta/codecs/reads/cram/CRAMEncoder.java 43.939% <ø> (ø)
...in/java/htsjdk/beta/codecs/reads/sam/SAMCodec.java 75.000% <ø> (ø)
.../java/htsjdk/beta/codecs/reads/sam/SAMDecoder.java 81.818% <ø> (ø)
.../beta/codecs/reads/sam/samV1_0/SAMEncoderV1_0.java 54.839% <ø> (ø)
... and 57 more
cmnbroad commented 3 years ago

Thanks @lbergelson. Can you hit merge (it won't let me do it) ? thx.

lbergelson commented 3 years ago

Oh, right, sorry!