search

samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.
http://samtools.github.io/htsjdk/
283 stars 242 forks source link

Don't write obsolete data series TC and TN to CRAM #1571

Closed cmnbroad closed 2 years ago

cmnbroad commented 3 years ago

See https://github.com/samtools/hts-specs/issues/598. We should remove these when writing, though we'll need to keep (accept and ignore) them on read for backward compatibility.

cmnbroad commented 2 years ago

This was fixed in https://github.com/samtools/htsjdk/pull/1578.