samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.
http://samtools.github.io/htsjdk/
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Add CRAM compliance tests against hts-specs test files #1587

Open cmnbroad opened 2 years ago

cmnbroad commented 2 years ago

Add CRAM compliance and round-trip tests using the test files in the hts-specs repo, and create tickets for any issues. TBD whether we'll include these as regular CI tests, or leave them to be run separately (carrot ?).

Yash has started working on these, with the WIP branch here. Test driver file is here.