Add VCF compliance tests against hts-specs test files

samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

http://samtools.github.io/htsjdk/

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Add VCF compliance tests against hts-specs test files #1588

Open cmnbroad opened 2 years ago

cmnbroad commented 2 years ago

Add VCF compliance and round-trip tests using the test files in the hts-specs repo, and create tickets for any issues. TBD whether we'll include these as regular CI tests, or leave them to be run separately (carrot ?).

A WIP branch is here.