Closed cmnbroad closed 2 years ago
Merging #1605 (e623f80) into master (f461401) will decrease coverage by
0.054%
. The diff coverage is89.189%
.:exclamation: Current head e623f80 differs from pull request most recent head c4e6130. Consider uploading reports for the commit c4e6130 to get more accurate results
@@ Coverage Diff @@
## master #1605 +/- ##
===============================================
- Coverage 69.838% 69.784% -0.054%
- Complexity 9666 9679 +13
===============================================
Files 703 703
Lines 37690 37639 -51
Branches 6121 6096 -25
===============================================
- Hits 26322 26266 -56
+ Misses 8914 8911 -3
- Partials 2454 2462 +8
Impacted Files | Coverage Δ | |
---|---|---|
...ava/htsjdk/samtools/cram/ref/ReferenceContext.java | 91.667% <ø> (ø) |
|
...sjdk/samtools/cram/structure/AlignmentContext.java | 43.137% <ø> (ø) |
|
...samtools/cram/structure/CRAMCompressionRecord.java | 80.161% <ø> (-0.302%) |
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...jdk/samtools/cram/ref/CRAMLazyReferenceSource.java | 66.667% <50.000%> (-33.333%) |
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...tsjdk/samtools/cram/build/CRAMReferenceRegion.java | 86.885% <84.906%> (-13.115%) |
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...ain/java/htsjdk/samtools/cram/structure/Slice.java | 82.865% <92.857%> (+0.414%) |
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...java/htsjdk/samtools/cram/ref/ReferenceSource.java | 46.721% <93.750%> (-0.008%) |
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src/main/java/htsjdk/samtools/CRAMIterator.java | 79.245% <100.000%> (-0.384%) |
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.../java/htsjdk/samtools/cram/build/SliceFactory.java | 97.101% <100.000%> (+0.998%) |
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...amtools/cram/structure/CRAMRecordReadFeatures.java | 87.330% <100.000%> (-0.225%) |
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... and 53 more |
Ok @lbergelson, back to you.
Fixes https://github.com/samtools/htsjdk/issues/1597 (support IGV browse more for CRAM decoding).