Codecov Report

Merging #1605 (e623f80) into master (f461401) will decrease coverage by 0.054%. The diff coverage is 89.189%.

:exclamation: Current head e623f80 differs from pull request most recent head c4e6130. Consider uploading reports for the commit c4e6130 to get more accurate results

@@               Coverage Diff               @@
##              master     #1605       +/-   ##
===============================================
- Coverage     69.838%   69.784%   -0.054%     
- Complexity      9666      9679       +13     
===============================================
  Files            703       703               
  Lines          37690     37639       -51     
  Branches        6121      6096       -25     
===============================================
- Hits           26322     26266       -56     
+ Misses          8914      8911        -3     
- Partials        2454      2462        +8

Impacted Files	Coverage Δ
...ava/htsjdk/samtools/cram/ref/ReferenceContext.java	`91.667% <ø> (ø)`
...sjdk/samtools/cram/structure/AlignmentContext.java	`43.137% <ø> (ø)`
...samtools/cram/structure/CRAMCompressionRecord.java	`80.161% <ø> (-0.302%)`	:arrow_down:
...jdk/samtools/cram/ref/CRAMLazyReferenceSource.java	`66.667% <50.000%> (-33.333%)`	:arrow_down:
...tsjdk/samtools/cram/build/CRAMReferenceRegion.java	`86.885% <84.906%> (-13.115%)`	:arrow_down:
...ain/java/htsjdk/samtools/cram/structure/Slice.java	`82.865% <92.857%> (+0.414%)`	:arrow_up:
...java/htsjdk/samtools/cram/ref/ReferenceSource.java	`46.721% <93.750%> (-0.008%)`	:arrow_down:
src/main/java/htsjdk/samtools/CRAMIterator.java	`79.245% <100.000%> (-0.384%)`	:arrow_down:
.../java/htsjdk/samtools/cram/build/SliceFactory.java	`97.101% <100.000%> (+0.998%)`	:arrow_up:
...amtools/cram/structure/CRAMRecordReadFeatures.java	`87.330% <100.000%> (-0.225%)`	:arrow_down:
... and 53 more

cmnbroad commented 2 years ago

Ok @lbergelson, back to you.

samtools / htsjdk

Support CRAM reference regions. #1605

Codecov Report