The SAM Spec allows for two additional values for PL inside Read Groups than currently implemented. I added both (ELEMENT and ULTIMA), in particular so the Ultima pipelines can be updated to use this for their read group values. I also cleaned up the formatting a bit to help readability of the code / comments.
Description
The SAM Spec allows for two additional values for PL inside Read Groups than currently implemented. I added both (
ELEMENT
andULTIMA
), in particular so the Ultima pipelines can be updated to use this for their read group values. I also cleaned up the formatting a bit to help readability of the code / comments.