@michaelgatzen Could you take a look at this? It turns out that IntervalList.uniqued() also sorts so I removed the other sorting, no good way to avoid it entirely.
I also switched the dictionary check to a more standard method that I hadn't known about, but it's now consistent with how other dictionary matching in CollectWgsMetrics is done.
@michaelgatzen Could you take a look at this? It turns out that IntervalList.uniqued() also sorts so I removed the other sorting, no good way to avoid it entirely. I also switched the dictionary check to a more standard method that I hadn't known about, but it's now consistent with how other dictionary matching in CollectWgsMetrics is done.