Feature/earthly

[genestack-okunitsyn]

Description

Please explain the changes you made here. Explain the motivation for making this change. What existing problem does the pull request solve?

Things to think about before submitting:

• [ ] Make sure your changes compile and new tests pass locally.
• [ ] Add new tests or update existing ones:
  • A bug fix should include a test that previously would have failed and passes now.
  • New features should come with new tests that exercise and validate the new functionality.
• [ ] Extended the README / documentation, if necessary
• [ ] Check your code style.
• [ ] Write a clear commit title and message
  • The commit message should describe what changed and is targeted at htsjdk developers
  • Breaking changes should be mentioned in the commit message.

[lbergelson]

@genestack-okunitsyn

Hello, could you explain what the goal of this PR is exactly? It looks like maybe you meant to make it into your own fork? It looks like there are some bug fixes that might be useful in master if you wanted to contribute those.

[genestack-okunitsyn]

@lbergelson Sorry, create this PR was my mistake.