IOUtil.openFileForMd5CalculatingWriting() puts the md5 file in the wrong place.

samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

http://samtools.github.io/htsjdk/

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IOUtil.openFileForMd5CalculatingWriting() puts the md5 file in the wrong place. #1682

Open lbergelson opened 1 year ago

lbergelson commented 1 year ago

It looks like I introduced a bug in IOUtil.openFileForMd5CalculatingWriting(). It appears to resolve filename/.md5 instead of filename.md5. We never noticed because it doesn't have tests.