Update for to use Java 21

samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

http://samtools.github.io/htsjdk/

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Open lbergelson opened 7 months ago

lbergelson commented 7 months ago

update tests to run on 21
remove deprecated uses of finalize, make DiskBackQueue and associated Autocloseable so that it's easier for downstream code to handle them without finalize Note: if this proves to be insufficient we should look into implementing a Cleaner
remove deprecated boxing constructors new Byte() -> Byte.valueof() etc