Pulls in the latest version of htscodecs, including a change to add #include "config.h" to the htscodecs test sources, allowing a hack (which didn't work on FreeBSD) that set _POSIX_C_SOURCE when building them to be removed. configure is also changed so that it adds #define _XOPEN_SOURCE 600 by default to config.h instead of relying on the PTHREAD_MUTEX_RECURSIVE test to do it, which allows that test and various other places that set _XOPEN_SOURCE to be removed. I've set the author of the commit that does this to @jmarshall as it's mostly his work - hopefully that's OK.
The other commits fix some minor annoyances when running make maintainer-check on a repository where configure has been run; and makes all the perl scripts use #!/usr/bin/env perl (some already did) so that they work on platforms like FreeBSD which put perl in /usr/local/bin.
Pulls in the latest version of htscodecs, including a change to add
#include "config.h"to the htscodecs test sources, allowing a hack (which didn't work on FreeBSD) that set_POSIX_C_SOURCEwhen building them to be removed.configureis also changed so that it adds#define _XOPEN_SOURCE 600by default toconfig.hinstead of relying on thePTHREAD_MUTEX_RECURSIVEtest to do it, which allows that test and various other places that set_XOPEN_SOURCEto be removed. I've set the author of the commit that does this to @jmarshall as it's mostly his work - hopefully that's OK.The other commits fix some minor annoyances when running
make maintainer-checkon a repository whereconfigurehas been run; and makes all the perl scripts use#!/usr/bin/env perl(some already did) so that they work on platforms like FreeBSD which put perl in/usr/local/bin.Fixes #1606 Closes #1608