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samtools / htslib

C library for high-throughput sequencing data formats
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Allow tabix indexing of GAF graph alignment files #1759

Closed adamnovak closed 3 months ago

adamnovak commented 3 months ago

This pulls in @jmonlong's implementation of Tabix indexing for GAF files, in graph node ID space.

This is to allow random access to bgzip-compressed GAF files in vgteam/vg using a tabix index.

whitwham commented 3 months ago

Thanks for the PR. You will need to rebase the commits to the latest version of htslib. I cannot do it because I do not have the permissions to make changes to your commits.