search

samtools / htslib

C library for high-throughput sequencing data formats
Other
803 stars 446 forks source link

Allow tabix indexing of GAF graph alignment files #1763

Closed adamnovak closed 6 months ago

adamnovak commented 6 months ago

This pulls in @jmonlong's implementation of Tabix indexing for GAF files, in graph node ID space.

This is to allow random access to bgzip-compressed GAF files in vgteam/vg using a tabix index.

adamnovak commented 6 months ago

@whitwham Github closed #1759 without permission when I pushed the wrong thing trying to do the rebase. This is the rebased version you requested.

adamnovak commented 6 months ago

@whitwham I've fixed the duplicate line.

whitwham commented 6 months ago

Merged. Thank you.