Collect and curate epidemiological data

samubernard / INSA3BIMCovid19

Spatial epidemiological model for covid-19 epidemics in France at Biosciences INSA Lyon

GNU General Public License v3.0

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Collect and curate epidemiological data #3

Open samubernard opened 4 years ago

samubernard commented 4 years ago

Sources:

https://data.humdata.org/dataset/novel-coronavirus-2019-ncov-cases
https://www.who.int
https://www.santepubliquefrance.fr/maladies-et-traumatismes/maladies-et-infections-respiratoires/infection-a-coronavirus/articles/infection-au-nouveau-coronavirus-sars-cov-2-covid-19-france-et-monde

File format should be CSV or similar text file for easy import to Matlab

samubernard commented 4 years ago

The files datasets/confirmed_cases_metr_france.csv, datasets/death_cases_metr_france.csv, and datasets/recovered_cases_metr_france.csv contain French official covid-19 counts. fetch_datasets.sh and parse_datasets.sh can be used to update the datasets.

samubernard commented 4 years ago

The New York times has detailed data made available: https://github.com/nytimes/covid-19-data