search

samueldnj / hierProdAnalysis

A simulation-estimation model for that compares the performance of hierarchical multispecies and single species surplus production stock assessment models.
0 stars 0 forks source link

Analyse msProd and ssProd ADMB MCMC output #15

Open samueldnj opened 7 years ago

samueldnj commented 7 years ago

biomass trajectories

Only really used for plotting posterior biomass estimates

Could be good to plot entire distributions

samueldnj commented 7 years ago

Created a plotMCMCpar function that plots the MS and SS posteriors for a given parameter, simulation and replicate. Currently won't plot parameters that appear in one model but not the other, eg the across-species correlated deviations don't get used in SS model, so these aren't supported

samueldnj commented 7 years ago

plotMCMCbio() plots posterior biomass estimates for a given rep and sim. Needs work.

spcox commented 7 years ago

when will I see some of these cool results?

Sean Cox Associate Professor Sch. of Resource and Environmental Mgmt Simon Fraser University 8888 University Drive Burnaby, B.C. V5A 1S6 website - http://www.rem.sfu.ca/fishgrp email - spcox@sfu.ca phone - 778.782.5778

On Oct 19, 2016, at 1:53 PM, Samuel Johnson notifications@github.com wrote:

plotMCMCbio() plots posterior biomass estimates for a given rep and sim. Needs work.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/samueldnj/coastWideMS/issues/15#issuecomment-254937604, or mute the thread https://github.com/notifications/unsubscribe-auth/AH29GITXwjbpSx4FYXMcVTNeniN2luQJks5q1oNTgaJpZM4J6F8P.

samueldnj commented 7 years ago

See issue #17 for how to improve plotting the MCMC output