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sandberg-lab / Smart-seq3

Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
GNU General Public License v3.0
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barcode list #1

Closed ndu-bioinfo closed 4 years ago

ndu-bioinfo commented 4 years ago

Hi I am wondering for paired end sequence how do you format the expected_barcodes.txt? Thanks

cziegenhain commented 4 years ago

Hi,

The expected_barcodes.txt always has the same format, independent of sinlge-end/paired-end sequencing. For more information on barcode handling in zUMIs, please read the relevant page in the zUMIs wiki: https://github.com/sdparekh/zUMIs/wiki/Barcodes