sandberg-lab txburst issues

sandberg-lab / txburst

Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Larsson et. al 2019).

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Can we compute tx burst kinetics on non-allelic scRNAseq datasets

#19 harshini-c opened 2 years ago
0
allelic read count file

#18 Hemantcnaik closed 3 years ago
0
Error while running txburstML.py

#17 srishastry123 closed 3 years ago
1
NA p-values from txburstTEST.py

#16 piplus2 closed 3 years ago
2
the reason behind burst size always > 1?

#15 vitkl closed 3 years ago
2
overflow error

#14 piplus2 closed 4 years ago
1
Using txburst

#13 Hemantcnaik opened 4 years ago
0
Request for processed data for CAST allele in mESCs

#12 yharigaya closed 4 years ago
2
High UMI counts when processing raw data

#11 CS-IRB opened 5 years ago
0
Influence of TATA & Inr elements

#10 Maarten-vd-Sande opened 5 years ago
5
MaximumLikelihood estimation depends on order of input values

#9 Maarten-vd-Sande closed 5 years ago
4
Profile likelihood calculation

#8 Maarten-vd-Sande closed 5 years ago
3
Parameters (burst freq and burst size) outside fig 1b range

#7 Maarten-vd-Sande closed 5 years ago
7
Code for producing the Figure 4e

#6 WT215 opened 5 years ago
0
smFISH data

#5 WT215 closed 5 years ago
1
About Extended Data Fig.3d

#4 WT215 closed 5 years ago
1
Listed dependencies incompatible

#3 Maarten-vd-Sande opened 5 years ago
0
UMI counts csv file

#2 olechnwin opened 5 years ago
1
Extension from BP3 to BP4

#1 mfilip8 opened 5 years ago
2